Genome wide underpinning of antagonistic and plant beneficial attributes of Bacillus sp. SBA12.
Identifieur interne : 000187 ( Main/Exploration ); précédent : 000186; suivant : 000188Genome wide underpinning of antagonistic and plant beneficial attributes of Bacillus sp. SBA12.
Auteurs : Richa Salwan [Inde] ; Vivek Sharma [Oman]Source :
- Genomics [ 1089-8646 ] ; 2020.
Abstract
The plant beneficial microorganisms in rhizosphere are promising candidates to counter plant biotic and abiotic stresses. In the present study, Bacillus sp. SBA12 antagonistic to plant pathogenic fungi such as Phytophthora infestans and Sclerotinia sclerotiorum was explored. The complete genome of SBA12 comprises 5,297,566 bp size with GC content 49% and a total of 5698 genes. The genomic organization revealed presence of several biosynthetic clusters for antibiotics, siderophore and various other bioactive compounds such as lanthipeptide, LAP, bacteriocin, siderophore, NRP and terpenes. The gene cluster for fengycin known for its role as elicitors in inducing plant immunity is also reported. Besides this, lytic enzymes chitinases, β-glucanases and proteases involved in pathogen suppression, acid and alkaline phosphatases, deaminases responsible for the phosphate solubilization and release of ammonia are also reported. The genomic organization of SBA12 revealed several hallmarks for plant growth promotion and pathogen suppression activities.
DOI: 10.1016/j.ygeno.2020.03.029
PubMed: 32247006
Affiliations:
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SBA12.</title><author><name sortKey="Salwan, Richa" sort="Salwan, Richa" uniqKey="Salwan R" first="Richa" last="Salwan">Richa Salwan</name><affiliation wicri:level="1"><nlm:affiliation>College of Horticulture and Forestry, Dr YS Parmar University of Horticulture & Forestry Neri, 177 001, HP, India.</nlm:affiliation><country xml:lang="fr">Inde</country><wicri:regionArea>College of Horticulture and Forestry, Dr YS Parmar University of Horticulture & Forestry Neri, 177 001, HP</wicri:regionArea><wicri:noRegion>HP</wicri:noRegion></affiliation></author><author><name sortKey="Sharma, Vivek" sort="Sharma, Vivek" uniqKey="Sharma V" first="Vivek" last="Sharma">Vivek Sharma</name><affiliation wicri:level="1"><nlm:affiliation>University Centre for Research and Development, Chandigarh University, Gharuan, Punjab, India 140413. Electronic address: ankvivek@gmail.com.</nlm:affiliation><country wicri:rule="url">Oman</country></affiliation></author></analytic><series><title level="j">Genomics</title><idno type="eISSN">1089-8646</idno><imprint><date when="2020" type="published">2020</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en">The plant beneficial microorganisms in rhizosphere are promising candidates to counter plant biotic and abiotic stresses. In the present study, Bacillus sp. SBA12 antagonistic to plant pathogenic fungi such as Phytophthora infestans and Sclerotinia sclerotiorum was explored. The complete genome of SBA12 comprises 5,297,566 bp size with GC content 49% and a total of 5698 genes. The genomic organization revealed presence of several biosynthetic clusters for antibiotics, siderophore and various other bioactive compounds such as lanthipeptide, LAP, bacteriocin, siderophore, NRP and terpenes. The gene cluster for fengycin known for its role as elicitors in inducing plant immunity is also reported. Besides this, lytic enzymes chitinases, β-glucanases and proteases involved in pathogen suppression, acid and alkaline phosphatases, deaminases responsible for the phosphate solubilization and release of ammonia are also reported. The genomic organization of SBA12 revealed several hallmarks for plant growth promotion and pathogen suppression activities.</div></front></TEI><pubmed><MedlineCitation Status="In-Process" Owner="NLM"><PMID Version="1">32247006</PMID><DateRevised><Year>2020</Year><Month>08</Month><Day>12</Day></DateRevised><Article PubModel="Print-Electronic"><Journal><ISSN IssnType="Electronic">1089-8646</ISSN><JournalIssue CitedMedium="Internet"><Volume>112</Volume><Issue>4</Issue><PubDate><Year>2020</Year><Month>07</Month></PubDate></JournalIssue><Title>Genomics</Title><ISOAbbreviation>Genomics</ISOAbbreviation></Journal><ArticleTitle>Genome wide underpinning of antagonistic and plant beneficial attributes of Bacillus sp. SBA12.</ArticleTitle><Pagination><MedlinePgn>2894-2902</MedlinePgn></Pagination><ELocationID EIdType="pii" ValidYN="Y">S0888-7543(19)30992-9</ELocationID><ELocationID EIdType="doi" ValidYN="Y">10.1016/j.ygeno.2020.03.029</ELocationID><Abstract><AbstractText>The plant beneficial microorganisms in rhizosphere are promising candidates to counter plant biotic and abiotic stresses. In the present study, Bacillus sp. SBA12 antagonistic to plant pathogenic fungi such as Phytophthora infestans and Sclerotinia sclerotiorum was explored. The complete genome of SBA12 comprises 5,297,566 bp size with GC content 49% and a total of 5698 genes. The genomic organization revealed presence of several biosynthetic clusters for antibiotics, siderophore and various other bioactive compounds such as lanthipeptide, LAP, bacteriocin, siderophore, NRP and terpenes. The gene cluster for fengycin known for its role as elicitors in inducing plant immunity is also reported. Besides this, lytic enzymes chitinases, β-glucanases and proteases involved in pathogen suppression, acid and alkaline phosphatases, deaminases responsible for the phosphate solubilization and release of ammonia are also reported. The genomic organization of SBA12 revealed several hallmarks for plant growth promotion and pathogen suppression activities.</AbstractText><CopyrightInformation>Copyright © 2020 Elsevier Inc. All rights reserved.</CopyrightInformation></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Salwan</LastName><ForeName>Richa</ForeName><Initials>R</Initials><AffiliationInfo><Affiliation>College of Horticulture and Forestry, Dr YS Parmar University of Horticulture & Forestry Neri, 177 001, HP, India.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Sharma</LastName><ForeName>Vivek</ForeName><Initials>V</Initials><AffiliationInfo><Affiliation>University Centre for Research and Development, Chandigarh University, Gharuan, Punjab, India 140413. 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